STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phf23PHD finger protein 23b. (312 aa)    
Predicted Functional Partners:
kansl3
KAT8 regulatory NSL complex subunit 3.
    
 0.898
mcrs1
Microspherule protein 1.
    
 0.889
kansl2
KAT8 regulatory NSL complex subunit 2.
    
 0.876
W5LWX1_LEPOC
C2H2-type domain-containing protein.
    
 0.703
prdm5
Zinc finger protein.
    
 0.703
W5NKG3_LEPOC
PR domain containing 4.
    
 0.703
suds3
SDS3 homolog, SIN3A corepressor complex component.
    
 
 0.665
kmt5b
Lysine methyltransferase 5B.
     
 0.654
brms1l
BRMS1 like transcriptional repressor b.
    
 
 0.648
camkmt
Calmodulin-lysine N-methyltransferase.
     
 0.648
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.