STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5NB48_LEPOCUncharacterized protein. (1269 aa)    
Predicted Functional Partners:
W5NB43_LEPOC
ANK_REP_REGION domain-containing protein.
 
      0.900
rhoc
Ras homolog family member Cb.
   
 0.762
LOC102682211
Ras homolog gene family, member Ab.
   
 0.762
W5NAW2_LEPOC
Ras homolog gene family, member Ab.
   
 0.762
rhob
Uncharacterized protein.
   
 0.762
rnd3
Rho family GTPase 3b.
   
 0.710
rnd1
Rho family GTPase 1a.
   
 0.710
rac1
Rac family small GTPase 1b.
   
 0.697
RAC3
Rac family small GTPase 3.
   
 0.697
W5MLK3_LEPOC
Uncharacterized protein.
     
 0.671
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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