dmpk protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

dmpk

Uncharacterized protein. (593 aa)

Predicted Functional Partners:

W5LX97_LEPOC

0.880

itsn2

0.691

W5N3Q3_LEPOC

0.642

rhof

0.631

W5M6P3_LEPOC

0.630

myl7

0.629

rnd3

0.614

rnd1

0.614

rhoc

0.614

LOC102682211

0.614

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102682211	W5LX97_LEPOC	ENSLOCP00000017610	ENSLOCP00000000754	Ras homolog gene family, member Ab.	CNH domain-containing protein.	0.614
LOC102682211	W5N3Q3_LEPOC	ENSLOCP00000017610	ENSLOCP00000015262	Ras homolog gene family, member Ab.	Signal-induced proliferation-associated 1 like 1.	0.428
LOC102682211	dmpk	ENSLOCP00000017610	ENSLOCP00000017867	Ras homolog gene family, member Ab.	Uncharacterized protein.	0.614
LOC102682211	itsn2	ENSLOCP00000017610	ENSLOCP00000001168	Ras homolog gene family, member Ab.	Intersectin 2b.	0.998
LOC102682211	myl7	ENSLOCP00000017610	ENSLOCP00000018671	Ras homolog gene family, member Ab.	Myosin, light chain 7, regulatory.	0.486
LOC102682211	rhof	ENSLOCP00000017610	ENSLOCP00000006224	Ras homolog gene family, member Ab.	Ras homolog family member F.	0.547
LOC102682211	rnd1	ENSLOCP00000017610	ENSLOCP00000008942	Ras homolog gene family, member Ab.	Rho family GTPase 1a.	0.524
LOC102682211	rnd3	ENSLOCP00000017610	ENSLOCP00000001797	Ras homolog gene family, member Ab.	Rho family GTPase 3b.	0.521
W5LX97_LEPOC	LOC102682211	ENSLOCP00000000754	ENSLOCP00000017610	CNH domain-containing protein.	Ras homolog gene family, member Ab.	0.614
W5LX97_LEPOC	W5M6P3_LEPOC	ENSLOCP00000000754	ENSLOCP00000004051	CNH domain-containing protein.	WD repeat domain 90.	0.630
W5LX97_LEPOC	dmpk	ENSLOCP00000000754	ENSLOCP00000017867	CNH domain-containing protein.	Uncharacterized protein.	0.880
W5LX97_LEPOC	itsn2	ENSLOCP00000000754	ENSLOCP00000001168	CNH domain-containing protein.	Intersectin 2b.	0.691
W5LX97_LEPOC	myl7	ENSLOCP00000000754	ENSLOCP00000018671	CNH domain-containing protein.	Myosin, light chain 7, regulatory.	0.629
W5LX97_LEPOC	rhoc	ENSLOCP00000000754	ENSLOCP00000012596	CNH domain-containing protein.	Ras homolog family member Cb.	0.614
W5LX97_LEPOC	rhof	ENSLOCP00000000754	ENSLOCP00000006224	CNH domain-containing protein.	Ras homolog family member F.	0.631
W5LX97_LEPOC	rnd1	ENSLOCP00000000754	ENSLOCP00000008942	CNH domain-containing protein.	Rho family GTPase 1a.	0.614
W5LX97_LEPOC	rnd3	ENSLOCP00000000754	ENSLOCP00000001797	CNH domain-containing protein.	Rho family GTPase 3b.	0.614
W5M6P3_LEPOC	W5LX97_LEPOC	ENSLOCP00000004051	ENSLOCP00000000754	WD repeat domain 90.	CNH domain-containing protein.	0.630
W5M6P3_LEPOC	dmpk	ENSLOCP00000004051	ENSLOCP00000017867	WD repeat domain 90.	Uncharacterized protein.	0.630
W5M6P3_LEPOC	myl7	ENSLOCP00000004051	ENSLOCP00000018671	WD repeat domain 90.	Myosin, light chain 7, regulatory.	0.586