STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rcn2Reticulocalbin 2. (305 aa)    
Predicted Functional Partners:
scaper
S-phase cyclin A-associated protein in the ER.
      
 0.531
tspan3
Tetraspanin.
   
  
 0.490
W5M5L5_LEPOC
Serine/threonine kinase 40.
    
 
 0.464
calr3
Calreticulin.
   
 
 0.452
LOC102684739
Calreticulin.
   
 
 0.452
W5NA94_LEPOC
Pseudopodium-enriched atypical kinase 1.
      
 0.426
tmbim4
Transmembrane BAX inhibitor motif containing 4; Belongs to the BI1 family.
      
 0.418
dnajc10
DnaJ (Hsp40) homolog, subfamily C, member 10.
   
 
 0.401
fam124b
Family with sequence similarity 124B.
      
 0.400
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.