STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scaperS-phase cyclin A-associated protein in the ER. (1475 aa)    
Predicted Functional Partners:
dnmbp
Dynamin binding protein.
      
 0.653
ehbp1
EH domain binding protein 1.
      
 0.651
iars1
Isoleucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.609
W5NK95_LEPOC
Uncharacterized protein.
      
 0.545
rcn2
Reticulocalbin 2.
      
 0.531
tspan3
Tetraspanin.
      
 0.499
isl2
ISL LIM homeobox 2a.
      
 0.497
nbas
Neuroblastoma amplified sequence.
      
 0.491
ccna2
Cyclin A2; Belongs to the cyclin family.
    
 
 0.455
W5MPI1_LEPOC
Cyclin A1; Belongs to the cyclin family.
    
 
 0.455
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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