STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCFC1Host cell factor C1. (1785 aa)    
Predicted Functional Partners:
ogt
O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1.
   
 0.966
ttc6
Tetratricopeptide repeat domain 6.
   
 0.935
wdr5
WD repeat domain 5.
   
 0.929
W5NA52_LEPOC
Ubiquitin carboxyl-terminal hydrolase.
    
 0.912
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.909
wsb2
WD repeat and SOCS box containing 2.
   
 0.859
wsb1
WD repeat and SOCS box containing 1.
   
 0.859
mcrs1
Microspherule protein 1.
    
 0.854
sirt1
Sirtuin 1.
    
 0.846
uchl5
Ubiquitin carboxyl-terminal hydrolase.
    
 0.845
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.