STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
capns1Calpain, small subunit 1 b. (216 aa)    
Predicted Functional Partners:
LOC102685634
Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family.
 
 
 0.937
capn7
Calpain 7; Belongs to the peptidase C2 family.
   
 0.897
capn6
Uncharacterized protein; Belongs to the peptidase C2 family.
 
 
 0.894
capn5
Calpain 5b; Belongs to the peptidase C2 family.
 
 
 0.888
W5MRF9_LEPOC
Calpain 15; Belongs to the peptidase C2 family.
   
 0.873
LOC102684587
Si:dkey-19b23.13; Belongs to the peptidase C2 family.
 
 
 0.839
capn3
Calpain 3a, (p94); Belongs to the peptidase C2 family.
   
0.814
W5NBL4_LEPOC
Calpain 12; Belongs to the peptidase C2 family.
   
0.814
CAPN9
Calpain 9; Belongs to the peptidase C2 family.
   
0.814
W5NF49_LEPOC
Calpain 1, (mu/I) large subunit a; Belongs to the peptidase C2 family.
   
0.814
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.