STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5NC33_LEPOCPolyglutamine binding protein 1. (234 aa)    
Predicted Functional Partners:
txnl4a
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
   
 0.985
W5N2N3_LEPOC
Uncharacterized protein.
    
 0.959
txnl4b
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
   
 0.953
W5LYK0_LEPOC
Catenin, beta like 1.
   
 
  0.724
WBP4
WW domain binding protein 4.
     
 0.724
W5N908_LEPOC
Aly/REF export factor.
    
  0.719
cd2bp2
CD2 (cytoplasmic tail) binding protein 2.
    
 
 0.710
zmat2
Zinc finger, matrin-type 2.
   
 
 0.693
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 
  0.684
prpf38a
Pre-mRNA processing factor 38A.
     
 0.683
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.