STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf128Ring finger protein 128a. (407 aa)    
Predicted Functional Partners:
OTUB2
OTU deubiquitinase, ubiquitin aldehyde binding 2.
    
 0.767
usp8
Ubiquitin specific peptidase 8; Belongs to the peptidase C19 family.
    
 0.758
usp21
USP domain-containing protein; Belongs to the peptidase C19 family.
    
 0.670
W5NAD7_LEPOC
Ubiquitin carboxyl-terminal hydrolase.
    
 0.636
LOC102682207
Retinal outer segment membrane protein 1a.
    
 
 0.611
rps27a
Ribosomal protein S27a.
    
  0.601
s100z
Protein S100; Belongs to the S-100 family.
      
 0.582
calu
Calumenin a.
      
 0.564
pnpla8
Patatin-like phospholipase domain containing 8.
      
 0.550
kcnv2
Potassium channel, subfamily V, member 2a; Belongs to the potassium channel family.
    
 
 0.545
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.