STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp3Ubiquitin carboxyl-terminal hydrolase. (523 aa)    
Predicted Functional Partners:
W5MQE4_LEPOC
Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.
    
 0.917
W5M3F8_LEPOC
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.912
rps27a
Ribosomal protein S27a.
    
 0.910
tada3
Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.
    
 0.907
taf9b
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.896
eny2
Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]
    
 0.876
W5NJJ7_LEPOC
TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.
   
 0.875
supt3h
SPT3 homolog, SAGA and STAGA complex component.
    
 0.850
W5MVP8_LEPOC
Transcriptional adapter.
    
 0.849
tada2a
Transcriptional adapter.
    
 0.846
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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