STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5NCP1_LEPOCSorbin and SH3 domain containing 3. (629 aa)    
Predicted Functional Partners:
vta1
Vesicle (multivesicular body) trafficking 1.
    
   0.888
W5MAE7_LEPOC
Vinculin a.
   
 0.847
W5MAG4_LEPOC
Uncharacterized protein.
   
 0.847
flot2
Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily.
    
 0.796
W5NFI2_LEPOC
Afadin, adherens junction formation factor a.
   
 0.786
gch1
GTP cyclohydrolase 1.
    
   0.780
LOC102693775
GTP cyclohydrolase 2.
    
   0.780
W5NCW3_LEPOC
Leucine-rich repeat LGI family, member 3.
      
 0.654
LOC102689506
Glutamic-oxaloacetic transaminase 1 like 1.
   
  
 0.624
PXN
Paxillin.
    
 0.613
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.