STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
efcab6EF-hand calcium binding domain 6. (1534 aa)    
Predicted Functional Partners:
W5M1L2_LEPOC
EF-hand domain (C-terminal) containing 2.
   
 
 0.961
efhb
EF-hand domain family, member B.
   
 
 0.961
efhc1
EF-hand domain (C-terminal) containing 1.
   
 
 0.948
spag8
Sperm associated antigen 8.
   
 
 0.941
cfap52
Cilia and flagella associated protein 52.
   
 0.934
ribc2
RIB43A domain with coiled-coils 2.
   
 
 0.894
cfap161
Cilia and flagella associated protein 161.
   
 
 0.877
W5MHD8_LEPOC
Family with sequence similarity 183 member A.
    
 
 0.876
tssk6
Testis-specific serine kinase 6; Belongs to the protein kinase superfamily.
    
 0.862
C7orf31
Chromosome 7 open reading frame 31.
   
   0.853
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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