STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5NDD5_LEPOCAnkyrin repeat and sterile alpha motif domain containing 1B. (1284 aa)    
Predicted Functional Partners:
LOC102693234
Fras1 related extracellular matrix 1b.
   
  0.691
frem1
Fras1 related extracellular matrix 1a.
   
  0.691
cask
Calcium/calmodulin-dependent serine protein kinase a; Belongs to the MAGUK family.
   
 0.679
W5LW97_LEPOC
tRNA-synt_1g domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.547
W5MFE5_LEPOC
Uncharacterized protein.
   
 0.547
bag4
BCL2 associated athanogene 4.
   
   0.533
ubxn7
UBX domain protein 7.
    
 0.506
KATNAL2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
   
 0.503
ift81
Intraflagellar transport 81 homolog.
    
 0.502
traf7
TNF receptor-associated factor 7.
    
 0.500
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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