STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc17a8Solute carrier family 17 member 8. (572 aa)    
Predicted Functional Partners:
slc18a3
Solute carrier family 18 member 3b.
     
 0.909
RIMS2
Regulating synaptic membrane exocytosis 2.
   
 
 0.892
slc18a2
Solute carrier family 18 member 2.
     
 0.792
SLC18A1
Solute carrier family 18 member A1.
     
 0.792
LOC102685578
Aa_trans domain-containing protein.
   
 
 0.786
slc32a1
Solute carrier family 32 member 1.
   
 
 0.786
W5NL69_LEPOC
Aa_trans domain-containing protein.
   
 
 0.786
LOC102685996
Synaptotagmin IIa.
   
 
 0.698
SYT1
Synaptotagmin Ia.
   
 
 0.698
snap25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.684
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.