STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5NDM2_LEPOCCaudal type homeobox 4. (277 aa)    
Predicted Functional Partners:
W5MFA7_LEPOC
Phosphodiesterase.
      
 0.487
six6
SIX homeobox 6a.
      
 0.422
W5NB54_LEPOC
8-oxoguanine DNA glycosylase.
      
 0.414
W5N3J1_LEPOC
Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.
      
 0.412
crx
Orthodenticle homolog 5.
      
 0.407
LOC102694060
SIX homeobox 7.
      
 0.400
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.