STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nkapNkap_C domain-containing protein. (390 aa)    
Predicted Functional Partners:
slu7
SLU7 homolog, splicing factor.
   
 0.972
fam32a
Family with sequence similarity 32 member A.
    
 0.929
prkrip1
PRKR interacting protein 1.
   
 0.926
sde2
SDE2 telomere maintenance homolog (S. pombe).
    
 0.922
cwc22
CWC22 spliceosome associated protein homolog.
   
  0.912
DDX41
DEAD-box helicase 41.
    
  0.889
syf2
SYF2 pre-mRNA-splicing factor.
    
  0.883
ppil1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.883
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
  0.883
cactin
Cactin.
    
 0.851
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.