STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5NDU5_LEPOCMitochondrial ribosomal protein L42. (126 aa)    
Predicted Functional Partners:
mrps18c
Mitochondrial ribosomal protein S18C; Belongs to the bacterial ribosomal protein bS18 family.
   
 
 0.975
mrps18a
Mitochondrial ribosomal protein S18A.
   
 
 0.969
mrpl32
Uncharacterized protein.
   
 
 0.966
mrpl41
Mitochondrial ribosomal protein L41.
   
 
 0.962
W5M1B9_LEPOC
Mitochondrial ribosomal protein L40.
   
   0.958
mrpl30
Mitochondrial ribosomal protein L30.
   
   0.956
mrpl13
Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
   
   0.955
mrpl16
Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.
    
 0.955
mrpl37
Mitochondrial ribosomal protein L37.
    
 
 0.954
mrps33
Mitochondrial ribosomal protein S33.
   
 
 0.954
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.