mxd1 protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mxd1

MAX dimerization protein 1. (224 aa)

Predicted Functional Partners:

max

0.970

sin3b

0.873

W5ND19_LEPOC

0.873

suds3

0.688

mycn

0.686

ripk4

0.656

gsk3b

0.648

rnf2

0.624

sirt7

0.599

W5MQL4_LEPOC

0.578

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W5MQL4_LEPOC	gsk3b	ENSLOCP00000010673	ENSLOCP00000008527	Sterol regulatory element binding transcription factor 1.	Glycogen synthase kinase 3 beta, genome duplicate b; Belongs to the protein kinase superfamily.	0.420
W5MQL4_LEPOC	max	ENSLOCP00000010673	ENSLOCP00000015298	Sterol regulatory element binding transcription factor 1.	Myc associated factor X.	0.593
W5MQL4_LEPOC	mxd1	ENSLOCP00000010673	ENSLOCP00000018852	Sterol regulatory element binding transcription factor 1.	MAX dimerization protein 1.	0.578
W5ND19_LEPOC	max	ENSLOCP00000018528	ENSLOCP00000015298	SIN3 transcription regulator family member Aa.	Myc associated factor X.	0.581
W5ND19_LEPOC	mxd1	ENSLOCP00000018528	ENSLOCP00000018852	SIN3 transcription regulator family member Aa.	MAX dimerization protein 1.	0.873
W5ND19_LEPOC	sin3b	ENSLOCP00000018528	ENSLOCP00000000100	SIN3 transcription regulator family member Aa.	SIN3 transcription regulator family member B.	0.633
W5ND19_LEPOC	suds3	ENSLOCP00000018528	ENSLOCP00000003848	SIN3 transcription regulator family member Aa.	SDS3 homolog, SIN3A corepressor complex component.	0.983
gsk3b	W5MQL4_LEPOC	ENSLOCP00000008527	ENSLOCP00000010673	Glycogen synthase kinase 3 beta, genome duplicate b; Belongs to the protein kinase superfamily.	Sterol regulatory element binding transcription factor 1.	0.420
gsk3b	max	ENSLOCP00000008527	ENSLOCP00000015298	Glycogen synthase kinase 3 beta, genome duplicate b; Belongs to the protein kinase superfamily.	Myc associated factor X.	0.648
gsk3b	mxd1	ENSLOCP00000008527	ENSLOCP00000018852	Glycogen synthase kinase 3 beta, genome duplicate b; Belongs to the protein kinase superfamily.	MAX dimerization protein 1.	0.648
gsk3b	mycn	ENSLOCP00000008527	ENSLOCP00000020353	Glycogen synthase kinase 3 beta, genome duplicate b; Belongs to the protein kinase superfamily.	MYCN proto-oncogene, bHLH transcription factor.	0.607
max	W5MQL4_LEPOC	ENSLOCP00000015298	ENSLOCP00000010673	Myc associated factor X.	Sterol regulatory element binding transcription factor 1.	0.593
max	W5ND19_LEPOC	ENSLOCP00000015298	ENSLOCP00000018528	Myc associated factor X.	SIN3 transcription regulator family member Aa.	0.581
max	gsk3b	ENSLOCP00000015298	ENSLOCP00000008527	Myc associated factor X.	Glycogen synthase kinase 3 beta, genome duplicate b; Belongs to the protein kinase superfamily.	0.648
max	mxd1	ENSLOCP00000015298	ENSLOCP00000018852	Myc associated factor X.	MAX dimerization protein 1.	0.970
max	mycn	ENSLOCP00000015298	ENSLOCP00000020353	Myc associated factor X.	MYCN proto-oncogene, bHLH transcription factor.	0.977
max	ripk4	ENSLOCP00000015298	ENSLOCP00000005472	Myc associated factor X.	Receptor-interacting serine-threonine kinase 4.	0.541
max	rnf2	ENSLOCP00000015298	ENSLOCP00000002095	Myc associated factor X.	Ring finger protein 2.	0.855
max	sin3b	ENSLOCP00000015298	ENSLOCP00000000100	Myc associated factor X.	SIN3 transcription regulator family member B.	0.581
max	sirt7	ENSLOCP00000015298	ENSLOCP00000015476	Myc associated factor X.	Sirtuin 7.	0.599