STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5NE48_LEPOCHistone deacetylase 10. (689 aa)    
Predicted Functional Partners:
W5MSQ6_LEPOC
AT rich interactive domain 4A (RBP1-like).
    
 0.933
W5NG20_LEPOC
Translocase of outer mitochondrial membrane 20.
    
 0.933
LOC102698545
Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.
    
 0.885
LOC102691803
Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.
    
 0.885
sin3b
SIN3 transcription regulator family member B.
    
 0.804
W5ND19_LEPOC
SIN3 transcription regulator family member Aa.
    
 0.804
W5MJK0_LEPOC
Histone H2B; Belongs to the histone H2B family.
    
 0.770
W5NLL5_LEPOC
Histone H2B; Belongs to the histone H2B family.
    
 0.770
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.769
HDAC2
Histone deacetylase 2; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
  
 
 
0.766
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (18%) [HD]