STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5NE87_LEPOCADAM metallopeptidase domain 9. (859 aa)    
Predicted Functional Partners:
lgi2
Leucine-rich repeat LGI family, member 2b.
     
 0.467
rasa1
RAS p21 protein activator (GTPase activating protein) 1b.
    
  0.463
sh3pxd2b
SH3 and PX domains 2B.
    
 0.452
sh3pxd2a
SH3 and PX domains 2Aa.
    
 0.452
cdh1
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
   
  0.447
W5MC12_LEPOC
Uncharacterized protein.
   
  0.447
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
    
  0.442
lgi1
Leucine-rich, glioma inactivated 1b.
     
 0.430
dlg1
Discs, large homolog 1 (Drosophila); Belongs to the MAGUK family.
    
  0.428
W5MDW0_LEPOC
Discs, large homolog 2 (Drosophila); Belongs to the MAGUK family.
    
  0.428
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.