STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fmr1Fragile X mental retardation 1. (614 aa)    
Predicted Functional Partners:
cyfip2
Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family.
    
 0.972
W5MNJ1_LEPOC
Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family.
    
 0.968
W5N6Q1_LEPOC
Fragile X mental retardation, autosomal homolog 2.
  
 
0.962
W5LWZ5_LEPOC
Fragile X mental retardation, autosomal homolog 1.
  
 
0.960
tdrd3
Tudor domain containing 3.
    
 
 0.847
W5MEQ3_LEPOC
Uncharacterized protein.
   
 
 0.726
serbp1
SERPINE1 mRNA binding protein 1b.
    
 
 0.702
dicer1
Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily.
    
 
 0.673
snd1
Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs.
    
 0.655
rmi1
RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae).
    
 
 0.655
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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