W5NEG1_LEPOC protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W5NEG1_LEPOC

NUAK family, SNF1-like kinase, 1b. (613 aa)

Predicted Functional Partners:

stk11

0.724

nt5dc3

0.496

ttc33

0.467

prkaa2

0.463

tssk6

0.453

LOC102694099

0.450

TSSK1B

0.448

LOC102688336

0.444

LOC102693163

0.444

LOC102694836

0.441

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102688336	W5NEG1_LEPOC	ENSLOCP00000004335	ENSLOCP00000019020	Pim proto-oncogene, serine/threonine kinase, related 4; Belongs to the protein kinase superfamily.	NUAK family, SNF1-like kinase, 1b.	0.444
LOC102693163	W5NEG1_LEPOC	ENSLOCP00000012915	ENSLOCP00000019020	Serine/threonine-protein kinase; Proto-oncogene with serine/threonine kinase activity involved in cell survival and cell proliferation. Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. PIM subfamily.	NUAK family, SNF1-like kinase, 1b.	0.444
LOC102694099	W5NEG1_LEPOC	ENSLOCP00000009042	ENSLOCP00000019020	Protein kinase domain-containing protein.	NUAK family, SNF1-like kinase, 1b.	0.450
LOC102694099	prkaa2	ENSLOCP00000009042	ENSLOCP00000010709	Protein kinase domain-containing protein.	Non-specific serine/threonine protein kinase.	0.413
LOC102694099	stk11	ENSLOCP00000009042	ENSLOCP00000006110	Protein kinase domain-containing protein.	Serine/threonine kinase 11; Belongs to the protein kinase superfamily.	0.684
LOC102694099	ttc33	ENSLOCP00000009042	ENSLOCP00000013790	Protein kinase domain-containing protein.	Non-specific serine/threonine protein kinase.	0.412
LOC102694836	W5NEG1_LEPOC	ENSLOCP00000003970	ENSLOCP00000019020	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	NUAK family, SNF1-like kinase, 1b.	0.441
TSSK1B	W5NEG1_LEPOC	ENSLOCP00000022250	ENSLOCP00000019020	Testis specific serine kinase 1B; Belongs to the protein kinase superfamily.	NUAK family, SNF1-like kinase, 1b.	0.448
TSSK1B	prkaa2	ENSLOCP00000022250	ENSLOCP00000010709	Testis specific serine kinase 1B; Belongs to the protein kinase superfamily.	Non-specific serine/threonine protein kinase.	0.415
TSSK1B	stk11	ENSLOCP00000022250	ENSLOCP00000006110	Testis specific serine kinase 1B; Belongs to the protein kinase superfamily.	Serine/threonine kinase 11; Belongs to the protein kinase superfamily.	0.682
TSSK1B	ttc33	ENSLOCP00000022250	ENSLOCP00000013790	Testis specific serine kinase 1B; Belongs to the protein kinase superfamily.	Non-specific serine/threonine protein kinase.	0.415
W5NEG1_LEPOC	LOC102688336	ENSLOCP00000019020	ENSLOCP00000004335	NUAK family, SNF1-like kinase, 1b.	Pim proto-oncogene, serine/threonine kinase, related 4; Belongs to the protein kinase superfamily.	0.444
W5NEG1_LEPOC	LOC102693163	ENSLOCP00000019020	ENSLOCP00000012915	NUAK family, SNF1-like kinase, 1b.	Serine/threonine-protein kinase; Proto-oncogene with serine/threonine kinase activity involved in cell survival and cell proliferation. Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. PIM subfamily.	0.444
W5NEG1_LEPOC	LOC102694099	ENSLOCP00000019020	ENSLOCP00000009042	NUAK family, SNF1-like kinase, 1b.	Protein kinase domain-containing protein.	0.450
W5NEG1_LEPOC	LOC102694836	ENSLOCP00000019020	ENSLOCP00000003970	NUAK family, SNF1-like kinase, 1b.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.441
W5NEG1_LEPOC	TSSK1B	ENSLOCP00000019020	ENSLOCP00000022250	NUAK family, SNF1-like kinase, 1b.	Testis specific serine kinase 1B; Belongs to the protein kinase superfamily.	0.448
W5NEG1_LEPOC	nt5dc3	ENSLOCP00000019020	ENSLOCP00000018478	NUAK family, SNF1-like kinase, 1b.	5'-nucleotidase domain containing 3.	0.496
W5NEG1_LEPOC	prkaa2	ENSLOCP00000019020	ENSLOCP00000010709	NUAK family, SNF1-like kinase, 1b.	Non-specific serine/threonine protein kinase.	0.463
W5NEG1_LEPOC	stk11	ENSLOCP00000019020	ENSLOCP00000006110	NUAK family, SNF1-like kinase, 1b.	Serine/threonine kinase 11; Belongs to the protein kinase superfamily.	0.724
W5NEG1_LEPOC	tssk6	ENSLOCP00000019020	ENSLOCP00000021738	NUAK family, SNF1-like kinase, 1b.	Testis-specific serine kinase 6; Belongs to the protein kinase superfamily.	0.453