STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdr45WD repeat domain 45. (358 aa)    
Predicted Functional Partners:
tecpr2
Tectonin beta-propeller repeat containing 2.
   
  
 0.624
ATG2B
Autophagy related 2B.
    
 
 0.592
W5LZ16_LEPOC
C2H2-type domain-containing protein.
    
 
 0.570
wipi2
WD repeat domain, phosphoinositide interacting 2.
   
0.565
wipi1
WD repeat domain, phosphoinositide interacting 1.
   
0.565
W5MIG3_LEPOC
Uncharacterized protein.
      
 0.552
W5N3Y4_LEPOC
CoA synthase.
      
 0.552
atg7
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 as well as the ATG8 family proteins for their conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Required for autophagic death induced by caspase-8 inhibition. Required for mitophagy which contributes to regulate mitochondrial quantity and quality by eliminating the mitochondria [...]
    
 
 0.542
W5LZ37_LEPOC
Chorein_N domain-containing protein.
    
 
 0.526
becn1
Beclin 1, autophagy related.
    
 
 0.522
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.