W5NEZ9_LEPOC protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W5NEZ9_LEPOC

Tau tubulin kinase 1b. (1304 aa)

Predicted Functional Partners:

ltv1

0.896

bysl

0.848

riok2

0.842

TSR1

0.756

nob1

0.729

W5M3Y2_LEPOC

0.725

W5MAA9_LEPOC

0.725

per1

0.725

rps3

0.718

rps2

0.682

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TSR1	W5NEZ9_LEPOC	ENSLOCP00000007846	ENSLOCP00000019208	TSR1 ribosome maturation factor.	Tau tubulin kinase 1b.	0.756
TSR1	bysl	ENSLOCP00000007846	ENSLOCP00000015583	TSR1 ribosome maturation factor.	Bystin-like.	0.999
TSR1	ltv1	ENSLOCP00000007846	ENSLOCP00000019004	TSR1 ribosome maturation factor.	LTV1 ribosome biogenesis factor.	0.999
TSR1	nob1	ENSLOCP00000007846	ENSLOCP00000001611	TSR1 ribosome maturation factor.	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	0.999
TSR1	riok2	ENSLOCP00000007846	ENSLOCP00000007770	TSR1 ribosome maturation factor.	RIO kinase 2 (yeast).	0.999
TSR1	rps2	ENSLOCP00000007846	ENSLOCP00000010821	TSR1 ribosome maturation factor.	Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.998
TSR1	rps3	ENSLOCP00000007846	ENSLOCP00000007738	TSR1 ribosome maturation factor.	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.988
W5M3Y2_LEPOC	W5NEZ9_LEPOC	ENSLOCP00000003090	ENSLOCP00000019208	Period circadian clock 3.	Tau tubulin kinase 1b.	0.725
W5MAA9_LEPOC	W5NEZ9_LEPOC	ENSLOCP00000005318	ENSLOCP00000019208	Period circadian clock 2.	Tau tubulin kinase 1b.	0.725
W5NEZ9_LEPOC	TSR1	ENSLOCP00000019208	ENSLOCP00000007846	Tau tubulin kinase 1b.	TSR1 ribosome maturation factor.	0.756
W5NEZ9_LEPOC	W5M3Y2_LEPOC	ENSLOCP00000019208	ENSLOCP00000003090	Tau tubulin kinase 1b.	Period circadian clock 3.	0.725
W5NEZ9_LEPOC	W5MAA9_LEPOC	ENSLOCP00000019208	ENSLOCP00000005318	Tau tubulin kinase 1b.	Period circadian clock 2.	0.725
W5NEZ9_LEPOC	bysl	ENSLOCP00000019208	ENSLOCP00000015583	Tau tubulin kinase 1b.	Bystin-like.	0.848
W5NEZ9_LEPOC	ltv1	ENSLOCP00000019208	ENSLOCP00000019004	Tau tubulin kinase 1b.	LTV1 ribosome biogenesis factor.	0.896
W5NEZ9_LEPOC	nob1	ENSLOCP00000019208	ENSLOCP00000001611	Tau tubulin kinase 1b.	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	0.729
W5NEZ9_LEPOC	per1	ENSLOCP00000019208	ENSLOCP00000016463	Tau tubulin kinase 1b.	Period circadian clock 1a.	0.725
W5NEZ9_LEPOC	riok2	ENSLOCP00000019208	ENSLOCP00000007770	Tau tubulin kinase 1b.	RIO kinase 2 (yeast).	0.842
W5NEZ9_LEPOC	rps2	ENSLOCP00000019208	ENSLOCP00000010821	Tau tubulin kinase 1b.	Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.682
W5NEZ9_LEPOC	rps3	ENSLOCP00000019208	ENSLOCP00000007738	Tau tubulin kinase 1b.	Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.718
bysl	TSR1	ENSLOCP00000015583	ENSLOCP00000007846	Bystin-like.	TSR1 ribosome maturation factor.	0.999