STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102683678Cofilin 1 (non-muscle), like; Belongs to the actin-binding proteins ADF family. (164 aa)    
Predicted Functional Partners:
limk1
LIM domain kinase 1b.
   
 0.972
limk2
LIM domain kinase 2.
   
 0.968
ssh1
Slingshot protein phosphatase 1b.
    
 0.923
W5MHY7_LEPOC
Slingshot protein phosphatase 2b.
    
 0.923
W5MNQ2_LEPOC
Si:ch211-203d1.3.
    
 0.923
actb
Actin, beta 1.
   
 0.920
ACTG1
Uncharacterized protein.
   
 0.920
WDR1
WD repeat domain 1.
   
 
 0.882
LOC102696289
Zgc:113162.
   
 0.870
cap1
Adenylyl cyclase-associated protein; Belongs to the CAP family.
   
 0.865
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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