STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5NF96_LEPOCPHD-type domain-containing protein. (223 aa)    
Predicted Functional Partners:
W5M3F8_LEPOC
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.999
taf13
TATA-box binding protein associated factor 13.
    
 0.999
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.999
taf11
TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.999
taf1
Transcription initiation factor TFIID subunit.
    
 0.999
taf9b
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.997
taf7l
TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.994
taf6
TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.993
W5M2A3_LEPOC
TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.
    
 0.987
tbp
TATA box binding protein.
    
 0.987
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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