STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UPF2UPF2 regulator of nonsense mediated mRNA decay. (1271 aa)    
Predicted Functional Partners:
rnps1
RNA binding protein S1, serine-rich domain.
    
 0.999
upf1
UPF1 RNA helicase and ATPase.
   
 0.997
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.996
upf3a
UPF3A regulator of nonsense mediated mRNA decay.
   
 0.994
upf3b
UPF3B regulator of nonsense mediated mRNA decay.
   
 0.994
W5MJK6_LEPOC
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family.
   
 
 0.978
SRRM1
Serine and arginine repetitive matrix 1.
    
 
 0.965
W5N7R0_LEPOC
Casc3 exon junction complex subunit.
    
 0.963
magoh
Mago homolog, exon junction complex subunit.
     
 0.937
pabpn1
Poly(A) binding protein, nuclear 1.
    
 0.913
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.