STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plxnc1Plexin C1. (1509 aa)    
Predicted Functional Partners:
nrp1
Neuropilin; Belongs to the neuropilin family.
    
 0.821
SEMA4D
Semaphorin 4D; Belongs to the semaphorin family.
    
 0.795
met
MET proto-oncogene, receptor tyrosine kinase.
    
 0.788
LOC102696479
Si:ch211-129c21.1; Belongs to the semaphorin family.
    
 0.787
sema7a
Semaphorin 7A; Belongs to the semaphorin family.
    
 0.751
W5NDE2_LEPOC
Uncharacterized protein; Belongs to the semaphorin family.
    
 0.751
sema3e
Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family.
    
 0.719
rap1a
RAP1A, member of RAS oncogene family b.
    
  0.707
rap1b
RAP1B, member of RAS oncogene family.
    
  0.707
W5N857_LEPOC
Plexin b1a.
    
 
0.667
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.