STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vrk2VRK serine/threonine kinase 2; Belongs to the protein kinase superfamily. (479 aa)    
Predicted Functional Partners:
ltv1
LTV1 ribosome biogenesis factor.
    
 0.896
bysl
Bystin-like.
    
 0.848
riok2
RIO kinase 2 (yeast).
    
 0.842
ankle2
Ankyrin repeat and LEM domain containing 2.
   
 0.838
LOC102685351
Barrier to autointegration factor 1.
    
 0.788
W5NM53_LEPOC
Uncharacterized protein.
    
 0.788
TSR1
TSR1 ribosome maturation factor.
    
 0.756
nob1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
    
 0.729
W5M3Y2_LEPOC
Period circadian clock 3.
    
 0.725
W5MAA9_LEPOC
Period circadian clock 2.
    
 0.725
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.