STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5NGZ4_LEPOCLEM domain containing 3. (841 aa)    
Predicted Functional Partners:
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.923
SMAD2
Mothers against decapentaplegic homolog.
    
 
 0.897
smad3
Mothers against decapentaplegic homolog.
    
 
 0.897
LOC102685351
Barrier to autointegration factor 1.
   
 0.846
W5NM53_LEPOC
Uncharacterized protein.
   
 0.846
W5NA28_LEPOC
RNA binding motif protein 25b.
   
 0.837
ints8
Integrator complex subunit 8.
    
 
 0.773
smad9
Mothers against decapentaplegic homolog.
    
 
 0.773
smad1
Mothers against decapentaplegic homolog.
    
 
 0.773
LOC102682912
Mothers against decapentaplegic homolog.
    
 
 0.773
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.