STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rin2Si:ch211-85n16.4. (894 aa)    
Predicted Functional Partners:
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
    
0.722
LOC102685971
Uncharacterized protein.
    
 0.722
W5MDX6_LEPOC
C-abl oncogene 1, non-receptor tyrosine kinase.
    
 0.663
LOC102686356
Tyrosine-protein kinase.
    
 0.663
LOC102696857
RAB5B, member RAS oncogene family.
    
 0.654
RAB17
RAB17, member RAS oncogene family.
    
 0.654
rab5a
RAB5A, member RAS oncogene family, b.
    
 0.654
rab5c
RAB5C, member RAS oncogene family.
    
 0.654
W5LZL7_LEPOC
GTPase activating protein and VPS9 domains 1.
    
 0.649
W5MSZ0_LEPOC
Zinc finger, AN1-type domain 4.
    
  0.602
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.