tbpl1 protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tbpl1

TBP-like 1. (186 aa)

Predicted Functional Partners:

gtf2b

0.994

W5MWF3_LEPOC

0.985

taf12

0.984

taf1

0.984

W5M3F8_LEPOC

0.983

gtf2e1

0.983

taf11

0.983

taf9b

0.983

taf7l

0.983

taf13

0.982

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W5M3F8_LEPOC	gtf2b	ENSLOCP00000002916	ENSLOCP00000006089	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	General transcription factor IIB.	0.982
W5M3F8_LEPOC	gtf2e1	ENSLOCP00000002916	ENSLOCP00000007590	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	General transcription factor IIE, polypeptide 1, alpha.	0.901
W5M3F8_LEPOC	taf1	ENSLOCP00000002916	ENSLOCP00000018291	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor TFIID subunit.	0.999
W5M3F8_LEPOC	taf11	ENSLOCP00000002916	ENSLOCP00000012255	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
W5M3F8_LEPOC	taf12	ENSLOCP00000002916	ENSLOCP00000004124	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
W5M3F8_LEPOC	taf13	ENSLOCP00000002916	ENSLOCP00000003389	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TATA-box binding protein associated factor 13.	0.999
W5M3F8_LEPOC	taf7l	ENSLOCP00000002916	ENSLOCP00000018847	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
W5M3F8_LEPOC	taf9b	ENSLOCP00000002916	ENSLOCP00000016900	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.999
W5M3F8_LEPOC	tbpl1	ENSLOCP00000002916	ENSLOCP00000020012	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TBP-like 1.	0.983
W5MWF3_LEPOC	gtf2b	ENSLOCP00000012712	ENSLOCP00000006089	BRF1 RNA polymerase III transcription initiation factor subunit b.	General transcription factor IIB.	0.794
W5MWF3_LEPOC	gtf2e1	ENSLOCP00000012712	ENSLOCP00000007590	BRF1 RNA polymerase III transcription initiation factor subunit b.	General transcription factor IIE, polypeptide 1, alpha.	0.453
W5MWF3_LEPOC	tbpl1	ENSLOCP00000012712	ENSLOCP00000020012	BRF1 RNA polymerase III transcription initiation factor subunit b.	TBP-like 1.	0.985
gtf2b	W5M3F8_LEPOC	ENSLOCP00000006089	ENSLOCP00000002916	General transcription factor IIB.	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.982
gtf2b	W5MWF3_LEPOC	ENSLOCP00000006089	ENSLOCP00000012712	General transcription factor IIB.	BRF1 RNA polymerase III transcription initiation factor subunit b.	0.794
gtf2b	gtf2e1	ENSLOCP00000006089	ENSLOCP00000007590	General transcription factor IIB.	General transcription factor IIE, polypeptide 1, alpha.	0.993
gtf2b	taf1	ENSLOCP00000006089	ENSLOCP00000018291	General transcription factor IIB.	Transcription initiation factor TFIID subunit.	0.989
gtf2b	taf11	ENSLOCP00000006089	ENSLOCP00000012255	General transcription factor IIB.	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.986
gtf2b	taf12	ENSLOCP00000006089	ENSLOCP00000004124	General transcription factor IIB.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.970
gtf2b	taf13	ENSLOCP00000006089	ENSLOCP00000003389	General transcription factor IIB.	TATA-box binding protein associated factor 13.	0.945
gtf2b	taf7l	ENSLOCP00000006089	ENSLOCP00000018847	General transcription factor IIB.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.949