STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TSPAN8Tetraspanin. (228 aa)    
Predicted Functional Partners:
ZFC3H1
Zinc finger C3H1-type containing.
      
 0.680
W5M227_LEPOC
Usher syndrome 1C.
   
 0.617
CPNE8
Copine 8.
      
 0.600
mst1r
Macrophage stimulating 1 receptor b.
    
 0.593
met
MET proto-oncogene, receptor tyrosine kinase.
    
 0.593
PTPRC
Protein tyrosine phosphatase receptor type C.
     
 0.590
sergef
Secretion regulating guanine nucleotide exchange factor.
      
 0.580
W5NHC7_LEPOC
TBC1 domain family, member 15.
      
 0.571
znf536
Zinc finger protein 536.
      
 0.560
ptgfrn
Si:ch211-132g1.7.
    
 
 0.547
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.