STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMEM19Transmembrane protein 19. (337 aa)    
Predicted Functional Partners:
W5LZ92_LEPOC
BSCL2 lipid droplet biogenesis associated, seipin, like.
    
   0.641
rundc3a
RUN domain containing 3Ab.
      
 0.553
W5MIA2_LEPOC
TR_THY domain-containing protein.
      
 0.538
slc30a5
Solute carrier family 30 member 5.
   
  
 0.524
rmdn1
Regulator of microtubule dynamics 1.
  
 
  0.523
dhdds
Alkyl transferase; Belongs to the UPP synthase family.
     
 0.520
nus1
NUS1 dehydrodolichyl diphosphate synthase subunit.
     
 0.520
lclat1
Lysocardiolipin acyltransferase 1.
  
 
  0.501
rmdn2
Regulator of microtubule dynamics 2.
  
 
  0.501
aup1
AUP1 lipid droplet regulating VLDL assembly factor.
    
  0.498
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.