STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102689425Homeobox domain-containing protein. (242 aa)    
Predicted Functional Partners:
pou1f1
POU domain protein.
    
 
 0.609
crh
Corticotropin releasing hormone a.
      
 0.594
ldb2
LIM domain binding 2a.
    
 0.541
ldb1
LIM domain binding 1a.
    
 0.541
srf
Serum response factor b.
    
 0.532
LHX3
LIM homeobox 3.
    
0.520
lhx4
LIM homeobox 4.
    
0.520
W5NI40_LEPOC
Prolactin 2.
      
 0.510
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 
 0.493
TCF4
Transcription factor 4.
    
  0.444
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.