STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rd3Retinal degeneration 3, GUCY2D regulator. (201 aa)    
Predicted Functional Partners:
cfl2
Cofilin 2 (muscle); Belongs to the actin-binding proteins ADF family.
      
 0.613
eif2b1
Eukaryotic translation initiation factor 2B, subunit 1 alpha; Belongs to the eIF-2B alpha/beta/delta subunits family.
    
   0.604
W5MWT4_LEPOC
Uncharacterized protein.
      
 0.586
prph2
Peripherin 2b (retinal degeneration, slow).
    
 
 0.550
spata7
Spermatogenesis associated 7.
      
 0.544
W5LVW0_LEPOC
RPGR1_C domain-containing protein.
      
 0.511
lca5
Lebercilin LCA5.
      
 0.502
LOC102691882
Peripherin 2-like a.
    
 
 0.463
W5N7Q9_LEPOC
ANF_receptor domain-containing protein.
    
 
 0.436
nek2
NIMA-related kinase 2.
      
 0.426
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.