STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fermt1Fermitin family member 1. (677 aa)    
Predicted Functional Partners:
W5MTJ8_LEPOC
Integrin-linked kinase.
   
 
 0.884
W5MMG4_LEPOC
Filamin binding LIM protein 1.
    
 0.804
lpp
LIM domain containing preferred translocation partner in lipoma.
    
 0.706
W5N6W6_LEPOC
LIM zinc-binding domain-containing protein.
    
 0.706
itgb6
Integrin beta; Belongs to the integrin beta chain family.
   
 0.657
itgb4
Integrin beta.
   
 0.656
lims1
LIM domain-containing protein.
   
 
 0.643
itgb8
Integrin beta; Belongs to the integrin beta chain family.
   
 0.635
pltp
Phospholipid transfer protein.
   
  
 0.614
W5ML54_LEPOC
Cerebellin 1 precursor.
      
 0.613
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.