STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptproProtein tyrosine phosphatase receptor type O. (1240 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.823
mst1r
Macrophage stimulating 1 receptor b.
    
 0.759
met
MET proto-oncogene, receptor tyrosine kinase.
    
 0.759
W5LZU4_LEPOC
Tenascin C.
    
  0.747
tnr
Tenascin R (restrictin, janusin).
    
  0.747
TNN
Tenascin N.
    
  0.747
rpl13a
Ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.
    
  0.612
W5M3A7_LEPOC
ARVCF delta catenin family member b.
    
 0.600
W5MMP6_LEPOC
Catenin (cadherin-associated protein), delta 1.
    
 0.600
LOC102695806
Junction plakoglobin b.
    
 0.570
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.