STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
erc1ELKS/RAB6-interacting/CAST family member 1a. (1138 aa)    
Predicted Functional Partners:
RIMS2
Regulating synaptic membrane exocytosis 2.
    
 
 0.955
W5LZN4_LEPOC
Regulating synaptic membrane exocytosis 3.
    
 
 0.658
W5NH40_LEPOC
Regulating synaptic membrane exocytosis 1a.
    
 
 0.658
rims4
Regulating synaptic membrane exocytosis 4.
    
 
 0.615
PPFIA1
PTPRF interacting protein alpha 1.
    
 
 0.554
W5MXK5_LEPOC
PTPRF interacting protein alpha 4.
    
 
 0.554
PPFIA2
PTPRF interacting protein alpha 2.
    
 
 0.554
itsn2
Intersectin 2b.
    
 
 0.504
W5LWS8_LEPOC
Kazrin, periplakin interacting protein a.
    
 
 0.492
TSPOAP1
TSPO associated protein 1.
   
 
 0.428
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.