STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps6kc1Ribosomal protein S6 kinase polypeptide 1. (1096 aa)    
Predicted Functional Partners:
W5NEK9_LEPOC
RAD50 interactor 1.
   
 0.994
use1
Unconventional SNARE in the ER 1 homolog (S. cerevisiae).
    
 0.993
stx18
Syntaxin 18.
    
 0.992
nbas
Neuroblastoma amplified sequence.
   
 0.992
zw10
Zw10 kinetochore protein.
    
 0.991
snx10
Sorting nexin 10b.
     
 0.858
snx11
Sorting nexin 11.
     
 0.858
snx12
Sorting nexin 12.
     
 0.858
snx3
Sorting nexin 3.
     
 0.858
ykt6
YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.
    
 0.743
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.