STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc25Coiled-coil domain containing 25. (207 aa)    
Predicted Functional Partners:
PKD1
Polycystin 1, transient receptor potential channel interacting.
    
 0.594
W5M8L2_LEPOC
Uncharacterized protein.
    
 0.594
W5MAE3_LEPOC
PLAT domain-containing protein.
    
 0.594
LOC102685258
Polycystic kidney disease 1b.
    
 0.594
pkd2l1
Polycystic kidney disease 2-like 1.
    
 0.594
W5N034_LEPOC
PKD_channel domain-containing protein.
    
 0.594
W5N2G2_LEPOC
Uncharacterized protein.
    
 0.594
W5N700_LEPOC
Uncharacterized protein.
    
 0.594
pkd2
Polycystic kidney disease 2.
    
 0.594
PKDREJ
Polycystin family receptor for egg jelly.
    
 0.594
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.