STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vsx1Visual system homeobox 1 homolog, chx10-like. (341 aa)    
Predicted Functional Partners:
atoh7
Atonal bHLH transcription factor 7.
   
  
 0.605
scgn
Secretagogin, EF-hand calcium binding protein.
      
 0.521
ptf1a
Pancreas associated transcription factor 1a.
   
  
 0.480
nxnl1
Nucleoredoxin like 1.
   
  
 0.459
W5MIQ0_LEPOC
ISL LIM homeobox 1.
   
  
 0.423
isl2
ISL LIM homeobox 2a.
   
  
 0.423
gap43
Growth associated protein 43.
      
 0.420
TMEM215
Transmembrane protein 215.
      
 0.408
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.