STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107079351Chitin synthase 1. (1028 aa)    
Predicted Functional Partners:
W5MG44_LEPOC
UDP-N-acetylglucosamine pyrophosphorylase 1, like 1.
     
 0.899
uap1
UDP-N-acetylglucosamine pyrophosphorylase 1.
     
 0.899
agpat2
1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
     
 0.542
W5MSQ6_LEPOC
AT rich interactive domain 4A (RBP1-like).
    
  0.488
W5NG20_LEPOC
Translocase of outer mitochondrial membrane 20.
    
  0.488
W5NJH3_LEPOC
Membrane bound O-acyltransferase domain containing 2a; Belongs to the membrane-bound acyltransferase family.
     
 0.487
tjp3
Tight junction protein 3; Belongs to the MAGUK family.
    
  0.474
W5MT12_LEPOC
Tight junction protein 2a (zona occludens 2); Belongs to the MAGUK family.
    
  0.474
tjp1
Tight junction protein 1a; Belongs to the MAGUK family.
    
  0.474
W5LZD9_LEPOC
Zgc:123305.
    
 0.463
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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