STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5NJL0_LEPOCTransmembrane protein 242. (81 aa)    
Predicted Functional Partners:
serac1
Serine active site containing 1.
      
 0.566
siae
Sialic acid acetylesterase.
      
 0.558
W5NHF2_LEPOC
TUB like protein 4a; Belongs to the TUB family.
      
 0.557
gtf2h5
General transcription factor IIH, polypeptide 5.
      
 0.553
W5NJM2_LEPOC
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
      
 0.536
tmem70
Transmembrane protein 70.
      
 0.532
cryzl1
Crystallin, zeta (quinone reductase)-like 1.
      
 0.524
W5MS56_LEPOC
URB1 ribosome biogenesis homolog.
      
 0.505
W5N069_LEPOC
Transmembrane protein 196b.
      
 0.428
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.