STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xrn25'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (944 aa)    
Predicted Functional Partners:
DXO
Decapping exoribonuclease.
   
 
 0.992
xrn1
5'-3' exoribonuclease 1.
  
 
0.988
rprd1b
Regulation of nuclear pre-mRNA domain containing 1B.
    
 
 0.928
rprd1a
Regulation of nuclear pre-mRNA domain containing 1A.
    
 
 0.928
FBF1
Fas binding factor 1.
    
 
 0.928
W5NA09_LEPOC
CDKN2A interacting protein.
    
 
 0.856
W5MHD1_LEPOC
Regulation of nuclear pre-mRNA domain containing 2a.
   
 
 0.846
CCDC66
Coiled-coil domain containing 66.
    
 
 0.841
W5M4J2_LEPOC
Nucleolar protein 9.
   
 
 0.807
W5MEK7_LEPOC
PRP40 pre-mRNA processing factor 40 homolog A.
   
  
 0.804
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.