STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5NJS9_LEPOCCollagen, type XII, alpha 1b. (3580 aa)    
Predicted Functional Partners:
W5NCX0_LEPOC
Tetratricopeptide repeat domain 41.
    
  0.526
W5MF23_LEPOC
Complement component 1, q subcomponent, C chain.
    
 
0.498
evpl
Envoplakin a.
  
  0.439
W5M103_LEPOC
DNA ligase.
    
 0.434
W5MHR5_LEPOC
Uncharacterized protein.
    
  0.430
W5MHT0_LEPOC
Uncharacterized protein.
    
  0.430
W5MU39_LEPOC
Uncharacterized protein.
    
  0.430
W5M196_LEPOC
WD repeat domain 18.
    
  0.424
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.421
itgb4
Integrin beta.
    
 0.421
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.