W5NJV3_LEPOC protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W5NJV3_LEPOC

5'-nucleotidase, ecto (CD73); Belongs to the 5'-nucleotidase family. (461 aa)

Predicted Functional Partners:

W5NJ40_LEPOC

0.931

LOC102685547

0.916

W5N065_LEPOC

0.914

gmpr

0.907

atic

0.906

W5MFA7_LEPOC

0.904

LOC102689797

0.904

pde6b

0.904

aprt

0.901

ada

0.895

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102685547	W5N065_LEPOC	ENSLOCP00000008346	ENSLOCP00000014024	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	Lyase_1 domain-containing protein.	0.708
LOC102685547	W5NJV3_LEPOC	ENSLOCP00000008346	ENSLOCP00000020912	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	5'-nucleotidase, ecto (CD73); Belongs to the 5'-nucleotidase family.	0.916
LOC102685547	aprt	ENSLOCP00000008346	ENSLOCP00000005714	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	Adenine phosphoribosyltransferase.	0.582
LOC102685547	gmpr	ENSLOCP00000008346	ENSLOCP00000003444	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	GMP reductase; Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides.	0.728
LOC102689797	W5NJV3_LEPOC	ENSLOCP00000014990	ENSLOCP00000020912	Phosphodiesterase.	5'-nucleotidase, ecto (CD73); Belongs to the 5'-nucleotidase family.	0.904
LOC102689797	aprt	ENSLOCP00000014990	ENSLOCP00000005714	Phosphodiesterase.	Adenine phosphoribosyltransferase.	0.861
LOC102689797	gmpr	ENSLOCP00000014990	ENSLOCP00000003444	Phosphodiesterase.	GMP reductase; Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides.	0.882
LOC102689797	pde6b	ENSLOCP00000014990	ENSLOCP00000015073	Phosphodiesterase.	Phosphodiesterase.	0.868
W5MFA7_LEPOC	W5NJV3_LEPOC	ENSLOCP00000007066	ENSLOCP00000020912	Phosphodiesterase.	5'-nucleotidase, ecto (CD73); Belongs to the 5'-nucleotidase family.	0.904
W5MFA7_LEPOC	aprt	ENSLOCP00000007066	ENSLOCP00000005714	Phosphodiesterase.	Adenine phosphoribosyltransferase.	0.861
W5MFA7_LEPOC	gmpr	ENSLOCP00000007066	ENSLOCP00000003444	Phosphodiesterase.	GMP reductase; Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides.	0.882
W5N065_LEPOC	LOC102685547	ENSLOCP00000014024	ENSLOCP00000008346	Lyase_1 domain-containing protein.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.708
W5N065_LEPOC	W5NJ40_LEPOC	ENSLOCP00000014024	ENSLOCP00000020649	Lyase_1 domain-containing protein.	Epoxide hydrolase 2, cytoplasmic.	0.914
W5N065_LEPOC	W5NJV3_LEPOC	ENSLOCP00000014024	ENSLOCP00000020912	Lyase_1 domain-containing protein.	5'-nucleotidase, ecto (CD73); Belongs to the 5'-nucleotidase family.	0.914
W5N065_LEPOC	ada	ENSLOCP00000014024	ENSLOCP00000002190	Lyase_1 domain-containing protein.	Adenosine deaminase.	0.787
W5N065_LEPOC	aprt	ENSLOCP00000014024	ENSLOCP00000005714	Lyase_1 domain-containing protein.	Adenine phosphoribosyltransferase.	0.967
W5N065_LEPOC	atic	ENSLOCP00000014024	ENSLOCP00000012237	Lyase_1 domain-containing protein.	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase.	0.998
W5N065_LEPOC	gmpr	ENSLOCP00000014024	ENSLOCP00000003444	Lyase_1 domain-containing protein.	GMP reductase; Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides.	0.768
W5NJ40_LEPOC	W5N065_LEPOC	ENSLOCP00000020649	ENSLOCP00000014024	Epoxide hydrolase 2, cytoplasmic.	Lyase_1 domain-containing protein.	0.914
W5NJ40_LEPOC	W5NJV3_LEPOC	ENSLOCP00000020649	ENSLOCP00000020912	Epoxide hydrolase 2, cytoplasmic.	5'-nucleotidase, ecto (CD73); Belongs to the 5'-nucleotidase family.	0.931