STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5NKE8_LEPOCUncharacterized protein. (157 aa)    
Predicted Functional Partners:
LOC102690794
Nuclear envelope integral membrane protein 1.
   
  
 0.584
ccdc150
Ubiquitin specific peptidase 16.
   
  
 0.558
CCDC34
Coiled-coil domain containing 34.
   
  
 0.556
C18orf54
Zgc:152948.
      
 0.552
clg5h3orf14
Si:dkey-274m17.3.
      
 0.544
gstcd
Glutathione S-transferase, C-terminal domain containing.
      
 0.541
W5M8P7_LEPOC
Centrosomal protein 85.
      
 0.527
aldh7a1
Aldehyde dehydrogenase 7 family, member A1; Belongs to the aldehyde dehydrogenase family.
   
 
 0.501
znf367
Zinc finger protein 367.
      
 0.495
slc13a3
Solute carrier family 13 member 3.
    
 0.482
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.