STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102692662Calcium homeostasis modulator family member 6. (319 aa)    
Predicted Functional Partners:
W5MFQ5_LEPOC
C19h1orf109 homolog (H. sapiens).
   
    0.683
W5MWV1_LEPOC
Rubicon like autophagy enhancer.
   
    0.539
W5MK86_LEPOC
PHD finger protein 20 like 1.
      
 0.530
lman2l
Lectin, mannose-binding 2-like a.
      
 0.530
cwc25
CWC25 spliceosome associated protein homolog.
   
    0.528
fbxo47
Uncharacterized protein.
   
    0.512
lix1
Limb and CNS expressed 1.
   
    0.483
LIX1L
Limb and CNS expressed 1 like.
   
    0.483
acot11
Acyl-CoA thioesterase 11a.
   
    0.455
ACOT12
Acyl-CoA thioesterase 12.
   
    0.455
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.