W5NKJ1_LEPOC protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W5NKJ1_LEPOC

B box-type domain-containing protein. (133 aa)

Predicted Functional Partners:

W5N5I9_LEPOC

0.738

W5MIF3_LEPOC

0.729

W5N5D9_LEPOC

0.729

cdc27

0.695

anapc4

0.695

cdc16

0.694

anapc5

0.694

anapc7

0.694

W5MTM3_LEPOC

0.694

rps27a

0.662

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W5MIF3_LEPOC	W5N5D9_LEPOC	ENSLOCP00000008162	ENSLOCP00000015848	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.933
W5MIF3_LEPOC	W5NKJ1_LEPOC	ENSLOCP00000008162	ENSLOCP00000021150	Mothers against decapentaplegic homolog.	B box-type domain-containing protein.	0.729
W5MIF3_LEPOC	rps27a	ENSLOCP00000008162	ENSLOCP00000019146	Mothers against decapentaplegic homolog.	Ribosomal protein S27a.	0.673
W5MTM3_LEPOC	W5NKJ1_LEPOC	ENSLOCP00000011732	ENSLOCP00000021150	CDC23 (cell division cycle 23, yeast, homolog).	B box-type domain-containing protein.	0.694
W5MTM3_LEPOC	anapc4	ENSLOCP00000011732	ENSLOCP00000017334	CDC23 (cell division cycle 23, yeast, homolog).	Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.	0.999
W5MTM3_LEPOC	anapc5	ENSLOCP00000011732	ENSLOCP00000006075	CDC23 (cell division cycle 23, yeast, homolog).	Anaphase promoting complex subunit 5.	0.999
W5MTM3_LEPOC	anapc7	ENSLOCP00000011732	ENSLOCP00000008730	CDC23 (cell division cycle 23, yeast, homolog).	Anaphase promoting complex subunit 7.	0.998
W5MTM3_LEPOC	cdc16	ENSLOCP00000011732	ENSLOCP00000003201	CDC23 (cell division cycle 23, yeast, homolog).	Cell division cycle 16 homolog (S. cerevisiae).	0.999
W5MTM3_LEPOC	cdc27	ENSLOCP00000011732	ENSLOCP00000016309	CDC23 (cell division cycle 23, yeast, homolog).	Cell division cycle 27.	0.999
W5MTM3_LEPOC	rps27a	ENSLOCP00000011732	ENSLOCP00000019146	CDC23 (cell division cycle 23, yeast, homolog).	Ribosomal protein S27a.	0.739
W5N5D9_LEPOC	W5MIF3_LEPOC	ENSLOCP00000015848	ENSLOCP00000008162	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.933
W5N5D9_LEPOC	W5NKJ1_LEPOC	ENSLOCP00000015848	ENSLOCP00000021150	Mothers against decapentaplegic homolog.	B box-type domain-containing protein.	0.729
W5N5D9_LEPOC	rps27a	ENSLOCP00000015848	ENSLOCP00000019146	Mothers against decapentaplegic homolog.	Ribosomal protein S27a.	0.673
W5N5I9_LEPOC	W5NKJ1_LEPOC	ENSLOCP00000015898	ENSLOCP00000021150	Uncharacterized protein.	B box-type domain-containing protein.	0.738
W5NKJ1_LEPOC	W5MIF3_LEPOC	ENSLOCP00000021150	ENSLOCP00000008162	B box-type domain-containing protein.	Mothers against decapentaplegic homolog.	0.729
W5NKJ1_LEPOC	W5MTM3_LEPOC	ENSLOCP00000021150	ENSLOCP00000011732	B box-type domain-containing protein.	CDC23 (cell division cycle 23, yeast, homolog).	0.694
W5NKJ1_LEPOC	W5N5D9_LEPOC	ENSLOCP00000021150	ENSLOCP00000015848	B box-type domain-containing protein.	Mothers against decapentaplegic homolog.	0.729
W5NKJ1_LEPOC	W5N5I9_LEPOC	ENSLOCP00000021150	ENSLOCP00000015898	B box-type domain-containing protein.	Uncharacterized protein.	0.738
W5NKJ1_LEPOC	anapc4	ENSLOCP00000021150	ENSLOCP00000017334	B box-type domain-containing protein.	Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.	0.695
W5NKJ1_LEPOC	anapc5	ENSLOCP00000021150	ENSLOCP00000006075	B box-type domain-containing protein.	Anaphase promoting complex subunit 5.	0.694